summary-to-cwl-template

CWL Workflow skeleton with per-step TODOs from source and design handoffs.

Related: nextflow-summary-to-cwl-interface
nextflow-summary-to-cwl-data-flow
paper-summary-to-cwl-design

Mold health

warn

Source layout
Directory Mold with only index.md frontmatter.
Axis fields
target-specific fields are coherent.
Eval plan
eval.md not written yet.
Typed refs
No typed references yet.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

axis: target-specific
target: cwl
name: summary-to-cwl-template

Artifact handoffs

/ pipeline contract

Produces

cwl-workflow-draft yaml cwl-workflow-draft.cwl

CWL Workflow skeleton: inputs, outputs, placeholder steps, rough connections, TODO slots for later implementation Molds.
consumed by
- implement-cwl-tool-step
- implement-cwl-workflow-test

summary-to-cwl-template

Read the original source artifact, the source summary, and all prior source-target design handoffs from the pipeline run. Emit a CWL Workflow skeleton with inputs, outputs, placeholder steps, rough connections, and TODO slots for later implementation Molds.

The interface and data-flow briefs guide the skeleton, but they do not replace source evidence. Treat the prior-step index as the working context: source summary, interface brief, data-flow brief or paper design brief, and any open questions carried forward.

Incoming References (2)

NEXTFLOW → CWLphase of pipeline— Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
PAPER → CWLphase of pipeline— Direct path from a paper to a CWL Workflow + CommandLineTool set.