Home Mold

implement-cwl-tool-step

Convert an abstract step into a concrete CWL CommandLineTool + step.

draft mold target/cwl

Mold health

warn

Source layout
Directory Mold with only index.md frontmatter.
Axis fields
target-specific fields are coherent.
Eval plan
eval.md not written yet.
Typed refs
No typed references yet.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

axis: target-specific
target: cwl
name: implement-cwl-tool-step

Artifact handoffs

/ pipeline contract

Produces

cwl-workflow-draft yaml cwl-workflow-draft.cwl

CWL Workflow skeleton with one more abstract step replaced by a concrete CommandLineTool step (loop iteration output).
consumed by
- implement-cwl-workflow-test

Consumes

cwl-tool-summary

Compact CWL tool summary from [[summarize-cwl-tool]]; binds the abstract step to a concrete CommandLineTool.
produced by
- summarize-cwl-tool
cwl-workflow-draft

CWL Workflow skeleton being filled in step by step; the step replaces a placeholder in this draft.
produced by
- summary-to-cwl-template

implement-cwl-tool-step

Stub. Replace with real Mold content per MOLD_SPEC once first walks are done.

Incoming References (2)

NEXTFLOW → CWLphase of pipeline— Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
PAPER → CWLphase of pipeline— Direct path from a paper to a CWL Workflow + CommandLineTool set.