Build Galaxy workflows
from anything.
Convert workflows authored in other systems — papers, Nextflow pipelines, CWL workflows —
into validated Galaxy workflows in the gxformat2 format.
The Foundry decomposes that conversion into atomic, schema-validated steps an LLM agent
can execute reliably, grounded in gxwf's static validation.
Pipelines
/ source × target 5 live · 1 openDirect path from a paper to a Galaxy gxformat2 workflow. No CWL intermediate.
draft 13 phases paper → cwl PAPER → CWLDirect path from a paper to a CWL Workflow + CommandLineTool set.
draft 11 phasesPath from a CWL Workflow to a Galaxy gxformat2 workflow. Lighter upstream extraction.
draft 14 phasesDirect path from a Nextflow pipeline to a Galaxy gxformat2 workflow.
draft 15 phases nextflow → cwl NEXTFLOW → CWLDirect path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
draft 12 phasesFoundry story
/ why this shapeMake the knowledge base actionable.
The Foundry keeps workflow-construction knowledge as inspectable notes: patterns, research, CLI docs, schemas, and best practices. Molds turn that rich source record into statically validated cast artifacts, so agents can load portable generated skills without losing the trail back to the documented reasoning.
