Foundry
Home pipeline · cwl → galaxy

CWL → GALAXY

Path from a CWL Workflow to a Galaxy gxformat2 workflow. Lighter upstream extraction.

draft pipelinesource/cwltarget/galaxy

Phases

/ subway map 14 phases
  1. summarize-cwl
  2. cwl-summary-to-galaxy-interface
  3. cwl-summary-to-galaxy-data-flow
  4. compare-against-iwc-exemplar
  5. cwl-summary-to-galaxy-template
  6. branch discover-or-author loop
  7. summarize-galaxy-tool loop
  8. implement-galaxy-tool-step loop
  9. validate-galaxy-step loop
  10. cwl-test-to-galaxy-test-plan
  11. implement-galaxy-workflow-test
  12. validate-galaxy-workflow
  13. run-workflow-test
  14. debug-galaxy-workflow-output

CWL → GALAXY

Direct path. Lifted from docs/HARNESS_PIPELINES.md §“CWL → GALAXY”.

CWL is already structured, so the upstream summarize-cwl → cwl-summary-to-galaxy-interface → cwl-summary-to-galaxy-data-flow chain is much lighter than its Nextflow counterpart. The per-step Galaxy authoring tier downstream is identical to the other Galaxy-targeting pipelines.