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run-workflow-test

Execute a workflow's tests via Planemo; emit structured pass/fail and outputs.

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  • Source layout

    Directory Mold with only index.md frontmatter.

  • Axis fields

    generic fields are coherent.

  • Eval plan

    eval.md declares cases and check type.

  • Typed refs

    5 typed references; 0 resolver issues.

  • On-demand triggers

    All on-demand references describe triggers.

  • Evidence checks

    Hypothesis references include verification.

axis
generic
name
run-workflow-test
contract

Reference Loading

Typed Mold references describe what casting consumes and when the generated skill should load each artifact.

Researchplanemo-asserts-idioms

Background synthesis loaded by explicit progressive-disclosure metadata.

Purpose
Interpret assertion failures and choose the right fast inner-loop command before full reruns.
Trigger
When a workflow test file exists and the task is to run, iterate, or classify its test assertions.
Researchplanemo-workflow-test-architecture

Background synthesis loaded by explicit progressive-disclosure metadata.

Purpose
Run workflow tests while preserving Planemo structured artifacts, Galaxy mode, invocation id, history id, and API follow-up context.
Trigger
When choosing between managed Galaxy, external Galaxy, full test runs, existing invocation checks, or direct workflow runs.

Cast artifacts

  • Claude skillrun-workflow-test— Execute a workflow's tests via Planemo; emit structured pass/fail and outputs.

How to install →

run-workflow-test

Stub. Replace with real Mold content per MOLD_SPEC once first walks are done.

Incoming References (8)

  • CWL → GALAXYphase of pipeline— Path from a CWL Workflow to a Galaxy gxformat2 workflow. Lighter upstream extraction.
  • NEXTFLOW → CWLphase of pipeline— Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
  • NEXTFLOW → GALAXYphase of pipeline— Direct path from a Nextflow pipeline to a Galaxy gxformat2 workflow.
  • PAPER → CWLphase of pipeline— Direct path from a paper to a CWL Workflow + CommandLineTool set.
  • PAPER → GALAXYphase of pipeline— Direct path from a paper to a Galaxy gxformat2 workflow. No CWL intermediate.
  • Galaxy workflow invocation failure referencerelated mold— Reference for Galaxy workflow invocation states, messages, failure reasons, and invocation API surfaces.
  • Planemo workflow-test architecturerelated mold— Reference for Planemo workflow test/run architecture, Galaxy modes, API polling, and noisy failure boundaries.
  • Galaxy workflow test formatrelated note— JSON Schema for the planemo workflow test format (`<workflow>-tests.yml`), vendored from `@galaxy-tool-util/schema`.