Structured contract copied for validation or lookup.
- Purpose
- Validate Galaxy workflow test files before starting a Planemo or Galaxy-backed execution.
run-workflow-test
Execute a workflow's tests via Planemo; emit structured pass/fail and outputs.
Mold health
ok- Source layout
Directory Mold with only index.md frontmatter.
- Axis fields
generic fields are coherent.
- Eval plan
eval.md declares cases and check type.
- Typed refs
5 typed references; 0 resolver issues.
- On-demand triggers
All on-demand references describe triggers.
- Evidence checks
Hypothesis references include verification.
- axis
- generic
- name
- run-workflow-test
contract
Reference Loading
Typed Mold references describe what casting consumes and when the generated skill should load each artifact.
Command reference. Usually cast to a sidecar and loaded only when invoked.
- Purpose
- Run static schema and workflow-label checks before expensive workflow execution.
- Trigger
- Before invoking Planemo when a Galaxy workflow test file is present.
Background synthesis loaded by explicit progressive-disclosure metadata.
- Purpose
- Interpret assertion failures and choose the right fast inner-loop command before full reruns.
- Trigger
- When a workflow test file exists and the task is to run, iterate, or classify its test assertions.
Background synthesis loaded by explicit progressive-disclosure metadata.
- Purpose
- Run workflow tests while preserving Planemo structured artifacts, Galaxy mode, invocation id, history id, and API follow-up context.
- Trigger
- When choosing between managed Galaxy, external Galaxy, full test runs, existing invocation checks, or direct workflow runs.
Background synthesis loaded by explicit progressive-disclosure metadata.
- Purpose
- Preserve invocation identifiers and state summaries needed to inspect workflow-level runtime failures after Planemo returns.
- Trigger
- When Planemo reports a failed, cancelled, missing-output, or ambiguous workflow invocation result.
Cast artifacts
- Claude skillrun-workflow-test— Execute a workflow's tests via Planemo; emit structured pass/fail and outputs.
run-workflow-test
Stub. Replace with real Mold content per MOLD_SPEC once first walks are done.
Incoming References (8)
- CWL → GALAXYphase of pipeline— Path from a CWL Workflow to a Galaxy gxformat2 workflow. Lighter upstream extraction.
- NEXTFLOW → CWLphase of pipeline— Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
- NEXTFLOW → GALAXYphase of pipeline— Direct path from a Nextflow pipeline to a Galaxy gxformat2 workflow.
- PAPER → CWLphase of pipeline— Direct path from a paper to a CWL Workflow + CommandLineTool set.
- PAPER → GALAXYphase of pipeline— Direct path from a paper to a Galaxy gxformat2 workflow. No CWL intermediate.
- Galaxy workflow invocation failure referencerelated mold— Reference for Galaxy workflow invocation states, messages, failure reasons, and invocation API surfaces.
- Planemo workflow-test architecturerelated mold— Reference for Planemo workflow test/run architecture, Galaxy modes, API polling, and noisy failure boundaries.
- Galaxy workflow test formatrelated note— JSON Schema for the planemo workflow test format (`<workflow>-tests.yml`), vendored from `@galaxy-tool-util/schema`.