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NEXTFLOW → GALAXY

Direct path from a Nextflow pipeline to a Galaxy gxformat2 workflow.

draft pipelinesource/nextflowtarget/galaxy

Phases

/ subway map 15 phases
  1. summarize-nextflow
  2. nextflow-summary-to-galaxy-reference-data
  3. nextflow-summary-to-galaxy-interface
  4. nextflow-summary-to-galaxy-data-flow
  5. compare-against-iwc-exemplar
  6. nextflow-summary-to-galaxy-template
  7. branch discover-or-author loop
  8. summarize-galaxy-tool loop
  9. implement-galaxy-tool-step loop
  10. validate-galaxy-step loop
  11. nextflow-test-to-galaxy-test-plan
  12. implement-galaxy-workflow-test
  13. validate-galaxy-workflow
  14. run-workflow-test
  15. debug-galaxy-workflow-output

NEXTFLOW → GALAXY

Direct path. Lifted from docs/HARNESS_PIPELINES.md §“NEXTFLOW → GALAXY”.

Replaces the prior-art hand-authored nf-to-galaxy skill — same goal, decomposed into Molds, validation-driven (gxwf static schema replaces the prose caveat catalog).