Structured contract copied for validation or lookup.
- Purpose
- Read source-level channel, parameter, process, and test-fixture evidence before choosing CWL Workflow inputs and outputs.
nextflow-summary-to-cwl-interface
Map a Nextflow summary into a CWL Workflow interface design brief.
Mold health
warn- Source layout
Directory Mold with only index.md frontmatter.
- Axis fields
source-specific fields are coherent.
- Eval plan
eval.md not written yet.
- Typed refs
1 typed reference; 0 resolver issues.
- On-demand triggers
All on-demand references describe triggers.
- Evidence checks
Hypothesis references include verification.
- axis
- source-specific
- source
- nextflow
- name
- nextflow-summary-to-cwl-interface
contract
Reference Loading
Typed Mold references describe what casting consumes and when the generated skill should load each artifact.
Artifact handoffs
/ pipeline contractProduces
-
Reviewable Markdown brief: CWL Workflow inputs, outputs, labels, array/record/File shapes, checkpoint outputs, source provenance.
Consumes
-
Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; the source-of-truth JSON for CWL interface choices.
nextflow-summary-to-cwl-interface
Read a Nextflow summary and emit a reviewable Markdown interface brief for a CWL Workflow. Capture workflow inputs, workflow outputs, labels, array/record/File shapes, checkpoint outputs worth exposing for tests, source-summary provenance, confidence, and open questions.
The output is a design handoff consumed by nextflow-summary-to-cwl-data-flow, summary-to-cwl-template, and later test-plan work.
Incoming References (4)
- nextflow-summary-to-cwl-data-flowrelated note— Translate a Nextflow summary into a CWL data-flow design brief.
- summary-to-cwl-templaterelated note— CWL Workflow skeleton with per-step TODOs from source and design handoffs.
- NEXTFLOW → CWLphase of pipeline— Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
- Nextflow pipeline summaryrelated note— JSON Schema for the structured summary emitted by the summarize-nextflow Mold.