Vendored from upstream, pinned at SHA
7765fae. One file lives next to this note:
datatypes_conf.xml.sample— the structured source. Agents and casting should consume this when reasoning about the canonical extension set, datatype subclassing, MIME types, auto-decompression (auto_compressed_types), per-extension converters, and the global<sniffer>order. Sync is manual.When to consult: picking valid
format=values for tool wrappers (see galaxy-xsd), choosing output extensions in Molds, mapping Nextflow file types onto Galaxy datatypes, or reasoning about sniff-order ambiguity between related text/tabular formats.
Galaxy datatypes registry sample
Vendored Galaxy datatypes registry sample: extension → datatype class mapping, sniff order, converters, and display applications.
component
Incoming References (6)
- Galaxy native workflow (.ga) structural JSON Schemarelated note— Vendored structural JSON Schema for Galaxy native workflow (.ga) format: vocabulary for the JSON shape Galaxy emits and consumes.
- Galaxy Workflow Testability Designrelated note— Design guidance for Galaxy workflow inputs, outputs, and checkpoints that make IWC-style workflow tests possible.
- gxformat2 structural JSON Schemarelated note— Vendored structural JSON Schema for gxformat2 workflows: vocabulary for inputs, outputs, steps, and step subtypes.
- gxformat2 workflow inputsrelated note— Conceptual model, current aliases, and schema gaps for gxformat2 workflow inputs.
- Nextflow path/glob to Galaxy datatype mappingrelated note— Rules for mapping Nextflow path, glob, sample-sheet, and output filename evidence to Galaxy datatype extensions.
- Nextflow to Galaxy reference-data mappingrelated note— Galaxy-side translation of Nextflow reference-data classifications: idioms available, the v1 posture, datatype defaults, and the in-tool rebuild trade-off.