Method
method/spectral-geometry
Geometry-aware spectral and diffusion scaffolds.
Method guide
Related notes
- phate PHATE, a diffusion-based embedding for visualizing continuous trajectory structure in single-cell data. Environment
- topometry TopoMetry 1.1.0, built because conda-forge stops at a release that predates the API the eLife paper is written against. Recipe
- topometry TopoMetry 0.2.1.1 from conda-forge: a packaging fixture pinning the only build on the channel, four years behind the paper. Environment
- TopoMetry An MIT-licensed toolkit for learning and evaluating spectral manifold representations of high-dimensional single-cell data. Package
- TopoMetry cell-cycle replication The pancreas result reproduces directionally, but TopoMetry's 2-D layouts ignore their seed — so no single-run layout number should be quoted. Replication experiment
- topometry-1.1 TopoMetry 1.1.0, the release the eLife version of record describes, staged from an in-repo recipe that fixes two upstream defects. Environment