TDA Bioinformatics Foundry
method/spectral-geometryapplication/single-cellmodality/high-dim-tabular

PHATE, a diffusion-based embedding for visualizing continuous trajectory structure in single-cell data.

phate

PHATE builds a diffusion-geometry embedding that preserves continuous progression structure rather than only local neighbourhoods, which is why it is a natural comparator for the spectral scaffolds in topometry-1.1-environment.

One Bioconda package, locked green, and therefore an automatic BioContainer.