Method
method/topological-deep-learning
Learning models built on topological representations.
Method guide
Related notes
- hiponet The HiPoNet research codebase run from a pinned git clone, with a locked dependency closure but nothing installable to package. Environment
- HiPoNet A multi-view simplicial complex network predicting cohort-level labels from high-dimensional cellular point clouds. Package
- HiPoNet melanoma replication The closest recoverable released procedure reached 67.27% against a reported 90.90%, on a platform arm that cannot yet settle why. Replication experiment
- open-topoqa-scorer The clean-room ProteinGAT retrain that scores what the sibling featurizer produces, packaged as the second half of an open TopoQA vertical. Recipe
- open-topoqa-scorer The MIT clean-room ProteinGAT scorer that closes the open TopoQA vertical, with weights retrained rather than reused. Environment
- open-topoqa-scorer The MIT clean-room ProteinGAT interface-quality scorer, retrained from the paper rather than reusing an unlicensed checkpoint. Package
- score-docking-poses Rank candidate protein-complex structures by predicted DockQ-like interface quality. Mold
- Simplicial Learning Learn on the complex itself — message passing over simplices and their Hodge structure rather than over graph edges. Method
- TDA and TDL Beyond Persistent Homology Su and colleagues' map of the topological methods that extend past persistent homology, and what each one recovers. Paper
- TDA and TDL in Molecular Sciences Wee and Jiang's account of how molecular problems pushed topology from description to conditioned, learnable representations. Paper
- topodockq The TopoDockQ scorer run from a pinned git clone; MIT-licensed but built around a Python 3.8 bytecode core with no source. Environment
- TopoDockQ A persistent-Laplacian scorer predicting DockQ interface quality to rank and filter peptide-protein docking poses. Package
- TopoQA A topological deep learning model ranking predicted protein-complex structures by the quality of their interface. Package
- TopoQA interface-quality replication The released TopoQA checkpoint does reproduce the paper's ranking losses — and part of the margin depends on a coordinate defect. Replication experiment