topic/positive-selection
Codon-model tests for positive selection (BUSTED/MEME/aBSREL/branch-site).
10 entries
Papers
- Beginner's Guide on the Use of PAML to Detect Positive Selection
- Effect of Recombination on the Accuracy of the Likelihood Method for Detecting Positive Selection at Amino Acid Sites
- Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
- Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses
- Detecting Individual Sites Subject to Episodic Diversifying Selection
- Gene-wide identification of episodic selection
- Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment
- Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
- Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level