domain/whole-genome-alignment
Genome-to-genome alignment / homology mapping (Cactus, HAL, minimap2, MUMmer, chain/net).
9 entries
Papers
- Progressive Cactus is a multiple-genome aligner for the thousand-genome era
- SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies
- HAL: a hierarchical format for storing and analyzing multiple genome alignments
- Pangenome graph construction from genome alignments with Minigraph-Cactus
- Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
- Minimap2: pairwise alignment for nucleotide sequences
- MUMmer4: A fast and versatile genome alignment system
- AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication
- A fully-automated method discovers loss of mouse-lethal and human-monogenic disease genes in 58 mammals