domain/molecular-evolution
Sequence change over evolutionary time (substitution, selection).
17 entries
Molds
Papers
- Beginner's Guide on the Use of PAML to Detect Positive Selection
- Effect of Recombination on the Accuracy of the Likelihood Method for Detecting Positive Selection at Amino Acid Sites
- Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
- Detecting macroevolutionary genotype-phenotype associations using error-corrected rates of protein convergence
- Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
- Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses
- Frequent adaptation and the McDonald-Kreitman test
- Detecting Individual Sites Subject to Episodic Diversifying Selection
- Gene-wide identification of episodic selection
- Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm
- Detecting positive selection within genomes: the problem of biased gene conversion
- Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment
- Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
- Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level